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Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø Institute of Cardiovascular Science

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September 2018

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Editor - Barbara Kramarz

Congratulations to Ruth on her promotion to Professorial Research Fellow!

We are very pleased to announce that Dr Ruth Lovering has beenÌýÌýto Professorial Research Associate. Ruth has been leading theÌýFunctional Gene Annotation team at Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø for theÌýlast ten years. Throughout this decade Ruth has contributed toÌýÌýof published knowledge about human proteins and miRNAs and promoted theÌýteams' work at internationalÌý. In line with Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø'sÌýConnected Curriculum, Ruth has also greatly contributed to teaching at Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø by having developed aÌýten-week MSc-levelÌýBioinformatics Resources module as well as aÌýtwo-day workshopÌýopen to Health and Life Science researchers at Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø.ÌýCongratulations, Ruth!

Congratulations on aÌýnew grant to describe theÌýroles of microRNAs in neuroinflammation

Congratulations to Professor Ruth Lovering (Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø), DrÌýRachael Huntley (Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø) and Professor David Brough (University of Manchester) on having been awarded aÌýgrant (ARUK-NSG2018-003) byÌýÌýto captureÌýpublished knowledge about microRNAs (miRNAs) implicated in neuroinflammatory processes and to curate theÌýroles of these miRNAs using Gene Ontology (GO) annotations. MiRNAs involved in regulation of expression of theÌýmicroglial proteinsÌýprioritised for GO annotation as aÌýpart of theÌýprotein annotation grant (ARUK-NAS2017A-1) will be curated first. Rachael is aÌýpioneer in theÌýfield of miRNA GO annotation and she will be theÌýmain curator working on this project. Rachael's key contributions to theÌýfield of miRNA bioinformatics already include theÌýdevelopment of GO guidelines for miRNA annotation () and curation of miRNAs associated with cardiovascular processes (). Rachael has also liaised with curators from different bioinformatics resources, e.g. , or , to ensure that these databases display theÌýmanually-curated GO annotations of miRNAs, which Ruth's team has been contributing. Work on this project will commence on 1stÌýOctober 2018.

ARUK-Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø Gene Ontology annotation progress

Collectively, all of theÌýARUK-funded work, has thus far resulted in 4771 GO annotations to 738 gene products, including proteins, microRNAs and macromolecular protein complexes involved in interactions withÌýamyloid-betaÌýandÌýtauÌýas well as in dementia-relevantÌýmicroglial processes. Among these 3338 GO annotations have been associated with 417 human gene products (EBI statistics: 23rd August 2018)

Promoting functional annotation work at Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø

Barbara's abstract has been selected for aÌý3-minute flash presentation at theÌýÌýon 7th September 2018. Our team is very grateful for this opportunity to introduce the GO resource to the ARUK Ïã¸ÛÁùºÏ²ÊÖÐÌØÍø Network community and explain how our work, so relevant in the era of 'Big Data', can help to improve the outcomes of high-throughput dementia research studies. Barbara will also be presenting aÌýposter at this meeting. Please come to see our poster and talk to Barbara during one of the poster sessions.

Meetings attended

In July Ruth attended another Gene Regulation Ensemble Effort for the Knowledge Commons () meeting in Graz, Austria, which focused on improving ontologies for capturing the role of transcription factors.

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